BTB Domain Database
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This database catalogs BTB proteins found in 17 fully sequenced eukaryotic genomes.
This database was the source for the analysis presented in the artcile "Sequence and structural analysis of BTB
proteins." Stogios PJ, Downs GS, Jauhal J, Nandra S and Privé GG, Genome Biology, 6:R82 (2005)
Protein sequences and annotation information can be retrieved by searching by
keywords or protein architecture (searching by gene or protein names, alternate names, or domain content),
search by BTB ID (each gene encoding a protein with a BTB domain was given a unique identifier), search by
sequence (query sequence is matched with our database via BLAST), or search our family of BTB-specific
HMM's (to identify which subfamily your BTB domain falls under).
More information on database construction information here.
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Search by keywords or protein architecture
Search keyword(s):
Select fields to search:
Protein name and aliases
Ensembl gene ID
Uniprot ID
RefSeq ID
Search species:
Search BTB protein architecture:
Logical operator between domains (use Ctrl/Apple key to select multiple domains):
ANDOR
Show all proteins in database
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Search by BTB ID
Search BTB IDs:
Example queries: 5,304-732,76,34,2401-2403
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Change fields to display with your search
Show all fields
Identifiers
Name and
Aliases Ensembl Gene ID
Ensembl Transcript ID Ensembl Peptide ID
Uniprot ID RefSeq ID
Species
Domain Architecture
Show HMM info for BTB domain: e-value, BTB start+end sites
( HMM definitions )
Show partner (non-BTB) domains
FASTA Line ( FASTA definitions )
Uniprot/Ensembl definition Short FASTA definition
Named FASTA definition
Sequence
Full protein length Full protein sequence
BTB domain sequence
Sequence N-terminal to BTB domain
Sequence C-terminal to BTB domain
Sort by:
Splice Variants
Hide
Show
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Search by sequence
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Search against BTB family-specific HMMs (uses hmmpfam command from
HMMER package, useful for locating
and classifying a BTB domain into a subfamily)
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