FASTA Definition Line Choices

Various FASTA definition lines were defined for each BTB domain sequence, to facilitate further analysis. The following are the explanations for each definition line.


SWISSPROT/ENSEMBL FASTA DEFINITION LINE

This FASTA definition line is utilized for correlation with the SWISSPROT and Ensembl databases. This FASTA Definition was obtained from either the SWISSPROT or Ensembl database. It contains the SWISSPROT ID or the Ensembl Gene ID and possibly a description of the protein. Where the description exceeds 95 characters, a minimum of 95 characters are used.
For example: >sp|Q14526|HIC1_HUMAN Hypermethylated in cancer 1 protein (Hic-1).


SHORT FASTA DEFINITION LINE

This FASTA definition line was created to simplify identification of BTB domain subfamily upon phylogenetic dendrogram generation. In one line, information about the organism, BTB identifier, and identify of other domians in the full protein can be see. This FASTA Definition is a short form which is less than or equal to 10 characters in length. The first character is a ">" followed by four numbers for the Internal BTB ID, a two letter designation for the organism (one for Genus, one for species), and a two letter designation for the protein domain(s).
For example: >0012HSZF

Short FormDomainShort FormDomain
2B2 BTB DomainsKTKV43channel
AFAntifreezeKTM+channel_nlg
ANANKLLLectin_legB
ARArmadilloMAMATH
ATAT_hookMDmultiple domains
BPBPD_transpMEMethyltransf_1
BSBSDMYMyb_DNA_bind
BZTF_bZIPNLNLS_BP
EFEF-handNOno other than BTB
ELELKNPNPH3
FBF-box PAPpantne_attach
FLFLYWCHPEPrenyl_site
GRGPCR_Rhodpsn PKProt_kinase
HAHelicase_associated_2PN5peptide_repeat
HCHistone_corePQHTH_Psq
HHHelix_hairpinPRPRO_rich
HTATPase_a/bcentreRBDS_RBD
INInvolucrin_rptRGReg_chr_condens
IQIQ_regionRHRho
KLKelchRHGTPase_Ras
KTK_tetraRHGTPase_Rho
KTKv_channelRHGTPase_Rab
KTKv6_channelSHSHprot_acsite
KTKv8_channelSKSkp1
KTKv9_channelSRSrcr_receptor
KTShaker_channelSUSupt5
KTShab_channelTBTonB_boxC
KTShaw_channelTLTLDc
KTShal_channelTPTPR
KTKV11channelTZTAZ_Finger
KTKV12channelUFDUF38
KTKV13channelWDWD40
KTKV14channelZBZnF_Bed
KTKV15channelZCZn_carbOpept
KTKV16channelZFZnF_C2H2
KTKV21channelZNZnF_NFX
KTKV41channelZTZnF_TTF
KTKV42channelZYZnF_FYVE


NAMED FASTA DEFINITION LINE

This FASTA Definition is a short form, to aid in differentiating BTB domains in a phylogenetic dendrogram. The first character is a ">" followed by a two letter designation for the organism (one for Genus, one for species), a period, and a four letter designation for the protein description.
For example: >HS.HIC1